miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|49542464|gb|CD786790.1|CD786790 CACTTAAAAAGGTGATTAAGCCTTCACTGGTGGCCCTTCACAAATGACTTGCGAAAGTGCAGGTAAGTGGTGTCATGCGA
GCGCAGCAGAGGATCTGGTGGATCGGTCTCCCGAGGACGGTCGTACACTGTCGAGATGAACGCCTCGCCTCGGTTGCGTT
TGCGCTTTTTCTTCGGGAACTTTCGTACCAGCTTTTCGCCTCGGTAACCAAATCCAGACCTGTCCCAAGGGTGTTGTCCA
GCATCGTCGATGGGCGCAGCTATGCCTTCCTTGGCACGACCAACACCTTCGCCTTCACTCCAGCCTTGCTGCTTCAGGAT
GCGGCTACCAAAGCCCTTTGTGTATTTCTCAAACGAAGCCAGCCTGTTCTCATCGTCCATCTCCTCGGGGGTCTCCCTCA
GCCTCTTGAAGTGCAGCATGGACACGTAGTCCCTCGCGTCCTTGTCTCCCGATTCAGGGTTGTAGTAGATGCTCATGTCA
ACATCCCAGTCATCCGACGTCTTGGCGTCAAAGTCGCCCTCTACTTCATCCCAGAACTGTGCATCGGTATAGAAGACTAG
GCCAGAACCGCCCTTCTCCCACTGAACTTCGAGTTCCTCTTCAAAAAGGCGTTCCCTCGTCCGTTCTTGGGATGTGACGT
CGTTATGCAGAGCTTCGTGCCGGTCCCACTCCTCGCACTCTTCATCGTCGCTCTCTTCCCGGTCCTTCTGCACATCGTCG
AAGTTCCGCTCTTTCTCACGTTTCACGAAGTGTCACCACCGCTCTCCGGTCGGCTCGGGCCGGCACTGGATAGAACGGCA
CCGGTCGCTGTCCGCACGAGAGGGAGTTTCCG




Most similar to sp|Q8BIY1|GPTC3_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8BIY1|GPTC3_MOUSE G patch domain-containing protein 3 OS=Mus
           musculus GN=Gpatch3 PE=2 SV=1
          Length = 525

 Score =  193 bits (490), Expect = 1e-48
 Identities = 101/213 (47%), Positives = 130/213 (61%), Gaps = 3/213 (1%)
 Frame = -3

Query: 662 RHEALHNDVTSQXXXXXXXXXXXXEVQWEKGGSGLVFYTDAQFWDEVEGDFDAKTSDDWD 483
           RHEALH DVT Q            E++WEKGGSGLVFYTDAQFW E EGDFD +T+DDWD
Sbjct: 303 RHEALHEDVTGQERTTERLFEEEIELKWEKGGSGLVFYTDAQFWQEEEGDFDEQTADDWD 362

Query: 482 VDMSIYYNPESGDKDARDYVSMLHFKRLRETPEEMDD-ENRLASFEKYTKGFGSRILKQQ 306
           VDMS+YY+ + GDKDARD V M   +RLRE  E+      ++ +FE++TKG G +++++Q
Sbjct: 363 VDMSVYYDRDGGDKDARDSVQMRLERRLREGQEDGSVLGGQVGTFERHTKGIGRKVMERQ 422

Query: 305 GWSEGEGVGRAKEGIAAPIDDAGQHPWDRSGFGYRGEXXXXXXXXXXXXXXRGEAFISTV 126
           GW+EG+G+G    G+   +D  GQHP  + G GY GE               G   IST+
Sbjct: 423 GWAEGQGLGSRCSGVPEALDGDGQHPRCKRGLGYHGE-KLQPFRQLKRPRRTGLGLISTI 481

Query: 125 YDRPRETDPPDPLLRSHDTTYLHFR--KSFVKG 33
           YD P   D  + LLR    T + FR   +FVKG
Sbjct: 482 YDEPLPQDQGETLLRRQPPTSMKFRTDMTFVKG 514